The Ancient World Online has a list of what it terms open-access journals. These are a mixture of those which have some online, and which are all online--and of course it is wider than Egyptology. A number are digitised versions of old and hard to find journals.

Online

• Abgadiyat | Arabic version
• Aegyptiaca. History of Reception of Ancient Egypt
• AERAGRAM Newsletter of Ancient Egypt Research Associates
• Bioarchaeology of the Near East
• British Museum Studies in Ancient Egypt and Sudan (BMSAES)
• Bulletin d'information archéologique
• Bulletin of the Association for the Study of Travel in Egypt and the Near East (ASTENE)
• Bulletin of the Museum of Fine Arts, Boston (Egyptian and Nubian Articles only)
• Egypte Nilotique et Méditerranéenne (ENiM)
• Internet Archaeology (requires subscription)
• Internet-Beiträge zur Ägyptologie und Sudanarchäologie (IBAES)
• Journal of Ancient Egyptian Interconnections (requires subscription to read articles)
• Journal of Ancient Egyptian Architecture
• Mittheilungen der Deutschen Orient-Gesellschaft (vols 1–100)
• The Meroitic Newsletter - A Digital Compilation
• PalArch's Journal of Archaeology of Egypt/Egyptology
• Revue Egyptologique (Internet Archive)

Online and printed

• Aegypten und Levante (A&L: some volumes are available online)
• Bulletin de la Céramique Egyptienne (BCE: older volumes are free online)
• Bulletin de l’Institut français d’archéologie orientale (BIFAO: older volumes are free online)
• Bibliotheca Orientalis from 1997 open access until 3 year rolling paywall
• Bulletin de l'institut égyptian
• Bulletin de la Société d'Égyptologie, Genève (BSEG: older volumes are free online)
• Comptes rendus des séances de l'Académie des Inscriptions et Belles-Lettres
• Journal of the American Research Center in Egypt (JARCE) Available online via a JSTOR subscription
• Journal of Coptic Studies (requires subscription)
• Journal of Egyptian Archaeology (JEA) Available online via a JSTOR subscription
• Journal of Egyptian History
• Journal of Near Eastern Studies (JNES) Available online via a JSTOR subscription
• Memnonia Selected volumes available online
• Mitteilungen der Deutschen Orient Gesellschaft (current site)
  Archived older PDF files (Tübingen)
• NeHeT
  
• Polish Archaeology in the Mediterranean (PAM)
• Prague Egyptological Studies
• Studien zur Altägyptischen Kultur (includes abstracts) Available online via a JSTOR subscription
• Trabajos de Egiptología - Papers on Ancient Egypt
• Zeitschrift für Ägyptische Sprache und Altertumskunde (older volumes available on the Internet Archive; listed at Wikisource)
• Zeitschrift der Deutschen Morgenländischen Gesellschaft until 2013

Printed

• Aegyptiaca Helvetica
• Archéologie du Nil Moyen (with abstracts)
• Archiv Orientálni (includes recent contents)
• Cahiers de Recherches de l’Institut de Papyrologie et d’Égyptologie de Lille (CRIPEL) (includes PDF of recent contents)
• Chronique d'Egypte (includes recent contents, several PDF articles). This is the French version; Dutch version
• Egitto e Vicino Oriente
• Göttinger Miszellen (includes contents)
  Online back issues are available on this link but some form of subscription is needed.
• Lingua Aegyptia (includes contents)
  Articles in vols 1, 2, 3 are available as downloadable PDFs
• Sokar
• Studien zur altägyptischen Kultur
  Online back issues are available on this link but some form of subscription is needed.

• KMT Magazine online
• Kemet magazine
• Ancient Egypt Magazine
• ARCHAEOLOGY Magazine online
• Nile Magazine
• Near Eastern Archaeology (formerly Biblical Archaeologist)
• Pharaon and Toutankhamon Magazines (Toutankhamon is now defunct)
• Thot (in French; email only)

• Newsletter of the Egyptian Ministry of Tourism and Antiquities (and predecessor)
• International Association for Coptic Studies

• Al-Ahram Weekly
• Egypt Daily News
• Egypt Independent (now apparently closed)